Taille:
INSTITUT DE BIOLOGIE DE L'ÉCOLE NORMALE SUPÉRIEURE

2017

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements

Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas-Chollier M, Noordermeer D, Charnay P, Gilardi-Hebenstreit P.
| Journal : PLoS Genetics | Pages : e1006903 | Issue : 7 | Volume : 13 |

Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin.

Bonnet A, Lambert G, Ernest S, Dutrieux FX, Coulpier F, Lemoine S, Lobbardi R, Rosa FM.
| Journal : Developmental Cell | Pages : 527–541 | Issue : | Volume : 42 |

Aozan: an automated post-sequencing data-processing pipeline

Perrin S, Firmo C, Lemoine S, Le Crom S, Jourdren L
| Journal : Bioinformatics | Pages : 2212–2213 | Issue : 33 | Volume : 14 |

Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.

Boulay AC, Saubaméa B, Adam N, Chasseigneaux S, Mazaré N, Gilbert A, Bahin M, Bastianelli L, Blugeon C, Perrin S, Pouch J, Ducos B, Le Crom S, Genovesio A, Chrétien F, Declèves X, Laplanche JL, Cohen-Salmon M.
| Journal : Cell Discovery | Pages : 17005 | Issue : | Volume : 3 |

Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms

Bussard A, Corre E, Hubas C, Duvernois-Berthet E, Le Corguillé G, Jourdren L, Coulpier F, Claquin P, Jean Lopez P
| Journal : Environmental Microbiology | Pages : 909-925 | Issue : 3 | Volume : 19 |

2016

A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata.

Merhej J, Thiebaut A, Blugeon C, Pouch J, Ali Chaouche Mel A, Camadro JM, Le Crom S, Lelandais G, Devaux F.
| Journal : Frontiers in Microbiology | Pages : | Issue : 7 | Volume : 645 |

IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans

Alzaid F, Lagadec F, Albuquerque M, Ballaire R, Orliaguet L, Hainault I, Blugeon C, Lemoine S, Lehuen A, Saliba DG, Udalova IA, Paradis V, Foufelle F, Venteclef N
| Journal : JCI Insight | Pages : e88689 | Issue : 1 | Volume : 20 |

Molecular signatures of neural connectivity in the olfactory cortex

Diodato A, Ruinart de Brimont M, Yim YS, Derian N, Perrin S, Pouch J, Klatzmann D, Garel S, Choi GB, Fleischmann A
| Journal : Nature Communications | Pages : | Issue : 7 | Volume : 12238 |

ChIPseq in Yeast Species: From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses

Lelandais G, Blugeon C, Merhej J
| Journal : Methods in Molecular Biology | Pages : 185-202 | Issue : | Volume : 1361 |

2015

Primary and secondary siRNA synthesis triggered by RNAs from food bacteria in the ciliate Paramecium tetraurelia

Carradec Q, Götz U, Arnaiz O, Pouch J, Simon M, Meyer E, Marker S
| Journal : Nucleic Acids Research | Pages : 1818-1833 | Issue : 3 | Volume : 43 |

Combined transcriptome studies identify AFF3 as a mediator of the oncogenic effects of β-catenin in adrenocortical carcinoma

Lefèvre L, Omeiri H, Drougat L, Hantel C, Giraud M, Val P, Rodriguez S, Perlemoine K, Blugeon C, Beuschlein F, de Reyniès A, Rizk-Rabin M, Bertherat J, Ragazzon B
| Journal : Oncogenesis | Pages : e161 | Issue : | Volume : 4 |

Control of plasma membrane permeability by ABC transporters

Khakhina S, Johnson SS, Manoharlal R, Russo SB, Blugeon C, Lemoine S, Sunshine AB, Dunham M, Cowart LA, Devaux F, Moye-Rowley WS
| Journal : Eukaryotic Cell | Pages : 442-453 | Issue : 5 | Volume : 14 |

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev IV, Baker SE, Margeot A, Seiboth B, Kubicek CP
| Journal : BMC Genomics | Pages : 326 | Issue : 1 | Volume : 16 |

Immune quiescence of the brain is set by astroglial connexin 43

Boulay AC, Mazeraud A, Cisternino S, Saubaméa B, Mailly P, Jourdren L, Blugeon C, Mignon V, Smirnova M, Cavallo A, Ezan P, Avé P, Dingli F, Loew D, Vieira P, Chrétien F, Cohen-Salmon M
| Journal : Journal of Neurosciences | Pages : 4427-4439 | Issue : 10 | Volume : 35 |

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei

Ghassemi S, Lichius A, Bidard F, Lemoine S, Rossignol MN, Herold S, Seidl-Seiboth V, Seiboth B, Espeso EA, Margeot A, Kubicek CP
| Journal : Molecular Microbiology | Pages : 405-418 | Issue : 2 | Volume : 96 |

The Sarcoglycan complex is expressed in the cerebrovascular system and is specifically regulated by astroglial Cx30 channels

Boulay AC, Saubaméa B, Cisternino S, Mignon V, Mazeraud A, Jourdren L, Blugeon C, Cohen-Salmon M
| Journal : Frontiers in Cellular Neuroscience | Pages : 1-9 | Issue : 9 | Volume : 9 |

Boundary Caps Give Rise to Neurogenic Stem Cells and Terminal Glia in the Skin

Gresset A, Coulpier F, Gerschenfeld G, Jourdon A, Matesic G, Richard L, Vallat JM, Charnay P, Topilko P
| Journal : Stem Cell Reports | Pages : 1-13 | Issue : | Volume : 5 |

2014

Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae

Mota S, Vieira N, Barbosa S, Delaveau T, Torchet C, Le Saux A, Garcia M, Pereira A, Lemoine S, Coulpier F, Darzacq X, Benard L, Casal M, Devaux F, Paiva S
| Journal : PLoS One | Pages : e111589 | Issue : 11 | Volume : 9 |

Loss of Krox20 results in aortic valve regurgitation and impaired transcriptional activation of fibrillar collagen genes

Odelin G, Faure E, Kober F, Maurel-Zaffran C, Théron A, Coulpier F, Guillet B, Bernard M, Avierinos JF, Charnay P, Topilko P, Zaffran S
| Journal : Cardiovasular research | Pages : 443-455 | Issue : 3 | Volume : 104 |

bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes

Merhej J, Frigo A, Le Crom S, Camadro JM, Devaux F, Lelandais G
| Journal : Yeast | Pages : 375-391 | Issue : 10 | Volume : 31 |

Genome-defence small RNAs exalted for epigenetic mating-type inheritance

Singh DP, Saudemont B, Guglielmi G, Arnaiz O, Goût JF, Prajer M, Potekhin A, Przybòs E, Aubusson-Fleury A, Bhullar S, Bouhouche K, Lhuillier-Akakpo M, Tanty V, Blugeon C, Alberti A, Labadie K, Aury JM, Sperling L, Duharcourt S, Meyer E
| Journal : Nature | Pages : 447-452 | Issue : 7501 | Volume : 509 |

Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Poggi-Parodi D, Bidard F, Pirayre A, Portnoy T, Blugeon C, Seiboth B, Kubicek CP, Le Crom S, Margeot A
| Journal : Biotechnology for Biofuels | Pages : 173 | Issue : 1 | Volume : 7 |

2013

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum

Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O\\'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen A, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L
| Journal : Nature Communications | Pages : 2091 | Issue : 0 | Volume : 4 |

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism

Atanasova L, Le Crom S, Gruber S, Coulpier F, Seidl-Seiboth V, Kubicek CP, Druzhinina IS
| Journal : BMC Genomics | Pages : 121 | Issue : 1 | Volume : 14 |

High-frequency promoter firing links THO complex function to heavy chromatin formation

Mouaikel J, Causse SZ, Rougemaille M, Daubenton-Carafa Y, Blugeon C, Lemoine S, Devaux F, Darzacq X, Libri D
| Journal : Cell Reports | Pages : 1082–1094 | Issue : 4 | Volume : 5 |

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, Keime C, Marot G, Castel D, Estelle J, Guernec G, Jagla B, Jouneau L, Laloë D, Le Gall C, Schaëffer B, Le Crom S, Guedj M, Jaffrézic F; French StatOmique Consortium
| Journal : Briefings in Bioinformatics | Pages : 671-683 | Issue : 6 | Volume : 14 |

2012

New partners in regulation of gene expression: the enhancer of trithorax and polycomb corto interacts with methylated ribosomal protein l12 via its chromodomain

Coléno-Costes A, Jang SM, de Vanssay A, Rougeot J, Bouceba T, Randsholt NB, Gibert JM, Le Crom S, Mouchel-Vielh E, Bloyer S, Peronnet F
| Journal : PLoS Genetics | Pages : e1003006 | Issue : 10 | Volume : 8 |

In Vitro Effect of Malachite Green on Candida albicans Involves Multiple Pathways and Transcriptional Regulators UPC2 and STP2

Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AH, Singh A, Blugeon C, Sanglard D, Prasad R
| Journal : Antimicrobial Agents and Chemotherapy | Pages : 495-506 | Issue : 1 | Volume : 56 |

Cthrc1 is a negative regulator of myelination in Schwann cells

Apra C, Richard L, Coulpier F, Blugeon C, Gilardi-Hebenstreit P, Vallat JM, Lindner V, Charnay P, Decker L
| Journal : Glia | Pages : 393-403 | Issue : 3 | Volume : 60 |

Eoulsan: A Cloud Computing-Based Framework Facilitating High Throughput Sequencing Analyses.

Jourdren L, Bernard M, Dillies MA, Le Crom S
| Journal : Bioinformatics | Pages : 1542-1543 | Issue : 11 | Volume : 28 |

RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans

Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée JY, Le Crom S, Prasad R, Devaux F
| Journal : BMC Genomics | Pages : 396 | Issue : 1 | Volume : 13 |

Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress.

Servant G, Pinson B, Tchalikian-Cosson A, Coulpier F, Lemoine S, Pennetier C, Bridier-Nahmias A, Todeschini AL, Fayol H, Daignan-Fornier B, Lesage P.
| Journal : Nucleic Acids Res | Pages : 5271-5282 | Issue : 12 | Volume : 40 |

2011

Dok4 is involved in Schwann cell myelination and axonal interaction in vitro

Blugeon C, Le Crom S, Richard L, Vallat JM, Charnay P, Decker L
| Journal : Glia | Pages : 351-362 | Issue : 3 | Volume : 59 |

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Doehren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gomez-Rodriguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernandez-Onate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lubeck M, Lubeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV
| Journal : Genome Biology | Pages : R40 | Issue : 4 | Volume : 18 |

The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation

Portnoy T, Margeot A, Linke R, Atanasova L, Fekete E, Sandor E, Hartl L, Karaffa L, Druzhinina IS, Seiboth B, Le Crom S, Kubicek CP
| Journal : BMC Genomics | Pages : 269 | Issue : 1 | Volume : 12 |

Boundary cap cells are peripheral nervous system stem cells that can be redirected into central nervous system lineages

Zujovic V, Thibaud J, Bachelin C, Vidal M, Deboux C, Coulpier F, Stadler N, Charnay P, Topilko P, Baron-Van Evercooren A
| Journal : Proceedings of The National Academy of Sciences of the United States of America | Pages : 10714-10719 | Issue : 26 | Volume : 108 |

Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae.

Jung PP, Fritsch ES, Blugeon C, Souciet JL, Potier S, Lemoine S, Schacherer J, de Montigny J.
| Journal : BMC Genomics | Pages : 331 | Issue : 1 | Volume : 12 |

Physiological and Toxic Effects of Purine Intermediate 5-Amino-4-imidazolecarboxamide Ribonucleotide (AICAR) in Yeast.

Hürlimann HC, Laloo B, Simon-Kayser B, Saint-Marc C, Coulpier F, Lemoine S, Daignan-Fornier B, Pinson B
| Journal : The Journal of Biological Chemistry | Pages : 30994-31002 | Issue : 35 | Volume : 286 |

Secreted amyloid precursor protein β and secreted amyloid precursor protein α induce axon outgrowth in vitro through Egr1 signaling pathway

Chasseigneaux S, Dinc L, Rose C, Chabret C, Coulpier F, Topilko P, Mauger G, Allinquant B
| Journal : PLoS One | Pages : e16301 | Issue : 1 | Volume : 6 |

Krox20 inactivation in the PNS leads to CNS/PNS boundary transgression by central glia

Coulpier F, Decker L, Funalot B, Vallat JM, Garcia-Bragado F, Charnay P, Topilko P
| Journal : Rev Neurol (Paris) | Pages : 51-56 | Issue : 1 | Volume : 167 |

Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase

Portnoy T, Margeot A, Seidl-Seiboth V, Le Crom S, Ben Chaabane F, Linke R, Seiboth B, Kubicek CP
| Journal : Eukaryot Cell | Pages : 262-271 | Issue : 2 | Volume : 10 |

2010

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.

Bernard D, Prasanth KV, Tripathi V, Colasse S, Nakamura T, Xuan Z, Zhang MQ, Sedel F, Jourdren L, Coulpier F, Triller A, Spector DL, Bessis A.
| Journal : EMBO J | Pages : 3082-3093 | Issue : 18 | Volume : 29 |

Boundary Cap Cells are Highly Competitive for CNS Remyelination: Fast Migration and Efficient Differentiation in PNS and CNS Myelin-Forming Cells

Zujovic V, Thibaud J, Bachelin C, Vidal M, Coulpier F, Charnay P, Topilko P, Baron-Van Evercooren A
| Journal : Stem Cells | Pages : 470-479 | Issue : 3 | Volume : 28 |

Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments

Jourdren L, Duclos A, Brion C, Portnoy T, Mathis H, Margeot A, Le Crom S
| Journal : Nucleic Acids Res. | Pages : e117 | Issue : 10 | Volume : 38 |

CNS/PNS Boundary Transgression by Central Glia in the Absence of Schwann Cells or Krox20/Egr2 Function

Coulpier F, Decker F, Funalot B, Vallat JM, Garcia-Bragado F, Charnay P, Topilko P
| Journal : The Journal of Neuroscience | Pages : 5958-5967 | Issue : 17 | Volume : 30 |

CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses

Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M
| Journal : RNA | Pages : 1301-1307 | Issue : 7 | Volume : 16 |

2009

Novel features of boundary cap cells revealed by the analysis of newly identified molecular markers.

Coulpier F, Le Crom S, Maro GS, Manent J, Giovannini M, Maciorowski Z, Fischer A, Gessler M, Charnay P, Topilko P
| Journal : Glia | Pages : 1450-1457 | Issue : 13 | Volume : 57 |

An evaluation of custom microarray applications: the oligonucleotide design challenge.

Lemoine S, Combes F, Le Crom S
| Journal : Nucleic Acids Research | Pages : 1726–1739 | Issue : 6 | Volume : 37 |

Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.

Golfier G, Lemoine S, van Miltenberg A, Bendjoudi A, Rossier J, Le Crom S, Potier MC
| Journal : Bioinformatics | Pages : 128-129 | Issue : 1 | Volume : 25 |

Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways.

Pinson B, Vaur S, Sagot I, Coulpier F, Lemoine S, Daignan-Fornier B
| Journal : Genes and development | Pages : 1399-1407 | Issue : 12 | Volume : 23 |

Phenotypic Consequences of Purine Nucleotide Imbalance in Saccharomyces cerevisiae.

Saint-Marc C, Pinson B, Coulpier F, Jourdren L, Lisova O, Daignan-Fornier B.
| Journal : Genetics | Pages : 529-538 | Issue : 2 | Volume : 183 |

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing

Le Crom S, Schackwitz W, Pennacchio P, Magnuson JK, Culley DE, Collett JR, Martin J, Druzhinina IS, Mathis S, Monot F, Seiboth B, Cherry B, Rey M, Berka R, Kubicek CP, Baker SE, Margeot A
| Journal : Proceedings of The National Academy of Sciences of the United States of America | Pages : 16151-16156 | Issue : 38 | Volume : 106 |

Genome-Wide Transcriptome Analyses of Silicon Metabolism in Phaeodactylum tricornutum Reveal the Multilevel Regulation of Silicic Acid Transporters.

Sapriel G, Quinet M, Heijde M, Jourdren L, Tanty V, Luo G, Le Crom S, Lopez PJ
| Journal : PLoS ONE | Pages : e7458 | Issue : 10 | Volume : 4 |

Genome-Wide Transcriptome Analyses of Silicon Metabolism in Phaeodactylum tricornutum Reveal the Multilevel Regulation of Silicic Acid Transporters

Sapriel G, Quinet M, Heijde M, Jourdren L, Tanty V, Luo G, Le Crom S, Lopez PJ
| Journal : PLoS ONE | Pages : e7458 | Issue : 4 | Volume : 10 |

2008

Co-regulation of yeast purine and phosphate pathways in response to adenylic nucleotide variations

Gauthier S, Coulpier F, Jourdren L, Merle M, Beck S, Konrad M, Daignan-Fornier B, Pinson B
| Journal : Molecular Microbiology | Pages : 1583-1594 | Issue : 6 | Volume : 68 |

Identification of Phox2b-regulated genes by expression profiling of cranial motoneuron precursors.

Pla P, Hirsch MR, Le Crom S, Reiprich S, Harley VR, Goridis C.
| Journal : Neural development | Pages : 1-16 | Issue : 14 | Volume : 3 |

Lethal accumulation of guanylic nucleotides in Saccharomyces cerevisiae HPT1-deregulated mutants.

Breton A, Pinson B, Coulpier F, Giraud MF, Dautant A, Daignan-Fornier B
| Journal : Genetics | Pages : 815-824 | Issue : 2 | Volume : 178 |

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata

Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F
| Journal : Genome Biology | Pages : R164 | Issue : 11 | Volume : 9 |

THO/Sub2p functions to coordinate 3\\'-end processing with gene-nuclear pore association.

Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RK, Lemoine S, Blugeon C, Boulay J, Jensen TH, Stutz F, Devaux F, Libri D
| Journal : Cell | Pages : 308-321 | Issue : 2 | Volume : 135 |

Structure and properties of transcriptional networks driving selenite stress response in yeasts.

Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F
| Journal : BMC Genomics | Pages : 333 | Issue : Jul 15 | Volume : 9 |

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization.

Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, Lemoine S, Tanty V, Devaux F, Jacq C
| Journal : PLoS ONE | Pages : e2293 | Issue : 6 | Volume : 3 |

2007

The Central Role of PDR1 in the Foundation of Yeast Drug Resistance

Fardeau V, Lelandais G, Oldfield A, Salin H, Lemoine S, Garcia M, Tanty V, Le Crom S, Jacq C, Devaux F
| Journal : J Biol Chem | Pages : 5063-5074 | Issue : 7 | Volume : 282 |

Mitochondria-associated Yeast mRNAs and the Biogenesis of Molecular Complexes.

Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C
| Journal : Molecular Biology of the Cell | Pages : 362-368 | Issue : 2 | Volume : 18 |

2006

Role of heat-shock factor 2 in cerebral cortex formation and as a regulator of p35 expression

Chang Y, Ostling P, Akerfelt M, Trouillet D, Rallu M, Gitton Y, El Fatimy R, Fardeau V, Le Crom S, Morange M, Sistonen L, Mezger V
| Journal : Genes & Development | Pages : 836-847 | Issue : 7 | Volume : 20 |

Goulphar: rapid access and expertise for standard two-color microarray normalization methods.

Lemoine S, Combes F, Servant N, Le Crom S
| Journal : BMC Bioinformatics | Pages : 467 | Issue : | Volume : 7 |

2005

Transcriptional regulation by Lge1p requires a function independent of its role in histone H2B ubiquitination.

Zhang X, Kolaczkowska A, Devaux F, Panwar SL, Hallstrom TC, Jacq C, Moye-Rowley WS.
| Journal : J Biol Chem | Pages : 2759-70 | Issue : 4 | Volume : 280 |

Early expression of yeast genes affected by chemical stress.

Lucau-Danila A, Lelandais G, Kozovska Z, Tanty V, Delaveau T, Devaux F, Jacq C.
| Journal : Mol Cell Biol. | Pages : 1860-8 | Issue : 5 | Volume : 25 |

Doelan: a solution for quality control monitoring of microarray production.

Jourdren L, Le Crom S
| Journal : Bioinformatics | Pages : 4194-495 | Issue : 22 | Volume : 21 |

2004

MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states

Lelandais G, Marc P, Vincens P, Jacq C, Vialette S
| Journal : BMC Bioinformatics | Pages : 20 | Issue : 1 | Volume : 5 |

Ady2p is essential for the acetate permease activity in the yeast Saccharomyces cerevisiae.

Paiva S, Devaux F, Barbosa S, Jacq C, Casal M
| Journal : Yeast | Pages : 201-210 | Issue : Issue 3 (Feb) | Volume : 21 |

yMGV: a cross-species expression data mining tool

Lelandais G, Le Crom S, Devaux F, Vialette S, Church GM, Jacq C, Marc P
| Journal : Nucleic Acids Research | Pages : D323-325 | Issue : Database issue | Volume : 32 |

Sok2p transcription factor is involved in adaptive program relevant for long term survival of Saccharomyces cerevisiae colonies.

Vachova L, Devaux F, Kucerova H, Ricicova M, Jacq C, Palkova Z.
| Journal : J Biol Chem. | Pages : 37973-81 | Issue : 36 | Volume : 279 |

2003

Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology

Kuthan M, Devaux F, Janderova B, Slaninova I, Jacq C, Palkova Z
| Journal : Molecular Microbiology | Pages : 745-754 | Issue : 3 | Volume : 47 |

Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast.

Ganem C, Devaux F, Torchet C, Jacq C, Quevillon-Cheruel S, Labesse G, Facca C, Faye G
| Journal : EMBO Journal | Pages : 1588-1598 | Issue : issue 7 (Apr 1) | Volume : 22 |

Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon

Lucau-Danila A, Delaveau T, Lelandais G, Devaux F, Jacq C
| Journal : Journal of Biological Chemistry | Pages : 52641-52650 | Issue : 52 | Volume : 278 |

A general strategy to uncover transcription factor properties identifies a new regulator of drug resistance in yeast

Hikkel I, Lucau-Danila A, Delaveau T, Marc P, Devaux F, Jacq C
| Journal : Journal of Biological Chemistry | Pages : 11427-11432 | Issue : 13 | Volume : 278 |

2002

Genome-wide analysis of mRNAs targeted to yeast mitochondria

Marc P, Margeot A, Devaux F, Blugeon C, Corral-Debrinski M, Jacq C
| Journal : EMBO Reports | Pages : 159-164 | Issue : 2 | Volume : 3 |

Ammonia pulses and metabolic oscillations guide yeast colony development

Palkova Z, Devaux F, Icicova M, Minarikova L, Le Crom S, Jacq C
| Journal : Molecular Biology of the Cell | Pages : 3901-3914 | Issue : 11 | Volume : 13 |

Arrayplot for visualization and normalization of cDNA microarray data

Marc P, Jacq C
| Journal : Bioinformatics | Pages : 888-889 | Issue : 6 | Volume : 18 |

Genome-wide studies on the nuclear PDR3-controlled response to mitochondrial dysfunction in yeast

Devaux F, Carvajal E, Moye-Rowley S, Jacq C
| Journal : FEBS Letters | Pages : 25-28 | Issue : 1-3 | Volume : 515 |

New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system

Le Crom S, Devaux F, Marc P, Zhang X, Moye-Rowley WS, Jacq C
| Journal : Molecular and Cellular Biology | Pages : 2642-2649 | Issue : 8 | Volume : 22 |

yMGV: helping biologists with yeast microarray data mining

Le Crom S, Devaux F, Jacq C, Marc P
| Journal : Nucleic Acids Research | Pages : 76-79 | Issue : 1 | Volume : 30 |

2001

An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor

Devaux F, Marc P, Bouchoux C, Delaveau T, Hikkel I, Potier MC, Jacq C
| Journal : EMBO Reports | Pages : 493-498 | Issue : 6 | Volume : 2 |

yMGV: a database for visualization and data mining of published genome-wide yeast expression data

Marc P, Devaux F, Jacq C
| Journal : Nucleic Acids Research | Pages : E63 | Issue : 13 | Volume : 29 |

Transcriptomes, transcription activators and microarrays

Devaux F, Marc P, Jacq C
| Journal : FEBS Letter | Pages : 140-144 | Issue : 2-3 | Volume : 498 |